Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83522964_83524265_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83522964 - 83524265

Intron Length:

1302

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGACA

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTGCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAC

U12 Branch Point Sequence:

GAATGTTTACCG

Flanking Amino Acid:

SCGNGTGLRNRNGSAISLSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.8

77.5

32.3

Major BPS

71.4

0.53

1.1

63.4

Major PPT

70.3

0.46

0.9

62.1

39.9

Minor 5ss

27.1

-2.6

2.9

31.6

42.4

Minor BPS

-0.4

49.84

Associated Gene:

Gene:

TMEM39A

Ensembl Gene ID:

ENSAPLG00000009675

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043926

83516750 - 83528564

11815

ENSAPLT00000010092

83516750 - 83524477

7728