About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83524457_83528552_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83524457 - 83528552
Intron Length:
4096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
CTTTAGTGATGT
Flanking Amino Acid:
MIVTTWEGIRIVWV
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
82.8
0.74
0.8
76.6
32
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
38.6
-0.7
2.5
61.34
48

Associated Gene:

Gene:
TMEM39A
Ensembl Gene ID:
ENSAPLG00000009675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043926
83516750 - 83528564
11815