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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83560073_83563362_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83560073 - 83563362
Intron Length:
3290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
ATGTTCTTCAGA
Flanking Amino Acid:
LDYGIYVIHQAGNTKFNRAK
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
90.5
0.91
0.6
87.5
22.7
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
49.9
-0
2
64.64
42.3

Associated Gene:

Gene:
B4GALT4
Ensembl Gene ID:
ENSAPLG00000009388
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042108
83545404 - 83568501
23098
ENSAPLT00000009797
83550734 - 83568501
17768