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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83571066_83571298_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83571066 - 83571298
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCCTACTCAATA
Flanking Amino Acid:
SKKETEEPWRREYQFQKCYH
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
79.6
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.8
0.74
0.9
80.5
36.7
Minor 5ss
42.8
-0.8
3.2
61.1
43.8
Minor BPS
54.8
0.15
1.8
64.29
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009258
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043433
83570911 - 83582867
11957