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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83590341_83593475_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
83590341 - 83593475
Intron Length:
3135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTCTAACCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.5
0.73
1
79.9
37.7
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
64.1
0.52
1.9
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020172
83587201 - 83596559
9359