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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83594388_83595661_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83594388 - 83595661
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGGCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCACAGCA
Flanking Amino Acid:
NTYSLELFEEMRYTRRVSVW
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
67.7
0.4
1
61.2
39.4
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
46.6
-0.2
2
66.2
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020172
83587201 - 83596559
9359