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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83596201_83596410_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83596201 - 83596410
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCTTCCTTCCTT
Flanking Amino Acid:
PTTRYLSLLRKETDENATSK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79.3
0.66
0.8
71.9
38
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
45.7
-0.2
3.6
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020172
83587201 - 83596559
9359