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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83714496_83716774_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83714496 - 83716774
Intron Length:
2279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTCTAAAACT
Flanking Amino Acid:
SVFVRAQKLSEKATIRPAKS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.7
0.69
0.8
76
32.4
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
58.7
0.35
2
81.57
39.9

Associated Gene:

Gene:
ARHGAP31
Ensembl Gene ID:
ENSAPLG00000009089
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045846
83709090 - 83724594
15505