About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83714496_83717477_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83714496 - 83717477
Intron Length:
2982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
TTCCCACTGACT
Flanking Amino Acid:
SVFVRAQKLSGEDEKSRFKR
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
77.5
0.62
0.7
70
30.9
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
50
0.08
2
75.24
41

Associated Gene:

Gene:
ARHGAP31
Ensembl Gene ID:
ENSAPLG00000009089
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009451
83709090 - 83722112
13023