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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83734216_83734820_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83734216 - 83734820
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTTGTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
AGAGACTTAGTA
Flanking Amino Acid:
WFGFAILCWTFFVLLGTMFY
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
86.9
0.83
0.7
84.4
30.5
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
46.1
-0.3
1.8
52.62
39.2

Associated Gene:

Gene:
UPK1B
Ensembl Gene ID:
ENSAPLG00000008825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009189
83734165 - 83739594
5430