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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83735970_83736268_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83735970 - 83736268
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGTTGAAGAACT
Flanking Amino Acid:
TKTWDKLMLQNQCCGVNGPS
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
45.2
-0.2
2.3
72.41
43.5

Associated Gene:

Gene:
UPK1B
Ensembl Gene ID:
ENSAPLG00000008825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009189
83734165 - 83739594
5430