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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83737201_83738766_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83737201 - 83738766
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
ACTGCTTAACTA
Flanking Amino Acid:
IKSSRTLLLVYIILMLITFA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
77.8
0.62
0.7
72
26.2
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
44.5
-0.4
1.9
52.18
41.2

Associated Gene:

Gene:
UPK1B
Ensembl Gene ID:
ENSAPLG00000008825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009189
83734165 - 83739594
5430