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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83738968_83739506_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83738968 - 83739506
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTACTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCCCCAATT
Flanking Amino Acid:
LLILGNVVIGMCGIALTAEC
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.6
0.67
0.9
77.2
36.7
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
62.4
0.47
1.9
83.85
36.7

Associated Gene:

Gene:
UPK1B
Ensembl Gene ID:
ENSAPLG00000008825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009189
83734165 - 83739594
5430