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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83756816_83757089_R

Intron Information:

Intron Rank:
151955
Intron Class:
major
Intron Phase:
Intron Coordinates:
83756816 - 83757089
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATATTT
5'SS Class:
major
3'SS Sequence:
GTCTCTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATCAAT
U12 Branch Point Sequence:
GGATCAATACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
79.5
29.2
Major BPS
51.3
0.03
1.4
62.7
41.6
Major PPT
70.8
0.47
0.9
68.9
37.1
Minor 5ss
38.5
-1.3
3.3
56.3
47.9
Minor BPS
44
-0.3
2
60.99
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029320
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047459
83755230 - 83805996
50767
ENSAPLT00000036405
83755230 - 83805996
50767
ENSAPLT00000034235
83755230 - 83757742
2513