About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83757369_83757640_R

Intron Information:

Intron Rank:
151956
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
83757369 - 83757640
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATGCAAG
5'SS Class:
weak_major
3'SS Sequence:
TTAAATATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATTTGTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.1
55.6
43.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.7
0.47
1
67.5
42.9
Minor 5ss
47
-0.3
2.6
62.4
43.3
Minor BPS
60.6
0.41
2.1
82.08
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029320
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034235
83755230 - 83757742
2513