About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83757369_83758163_R

Intron Information:

Intron Rank:
151960
Intron Class:
major
Intron Phase:
Intron Coordinates:
83757369 - 83758163
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
TTAAATATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATTTGTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.5
41.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.7
0.47
1
67.5
42.9
Minor 5ss
37.7
-1.4
3
45.6
43.8
Minor BPS
60.6
0.41
2.1
82.08
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029320
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047459
83755230 - 83805996
50767
ENSAPLT00000036405
83755230 - 83805996
50767