Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83776532_83776672_F

Intron Information:

Intron Rank:

146358

Intron Class:

major

Intron Phase:

Intron Coordinates:

83776532 - 83776672

Intron Length:

141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TATGTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCATAT

U12 Branch Point Sequence:

ATATCCCTATGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.9

35.2

Major BPS

0.23

1.2

42.7

Major PPT

80.4

0.68

0.9

74.2

36.2

Minor 5ss

44.8

-0.6

2.6

56.7

47.6

Minor BPS

48.5

-0

2.2

72.19

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018361

83775731 - 83777082

1352