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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83859347_83883863_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83859347 - 83883863
Intron Length:
24517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTTTATT
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AATACTTAAACT
Flanking Amino Acid:
MTSLGTQGMVCPLEVSV
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
76.3
38.9
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
87.5
0.84
0.6
81.1
31
Minor 5ss
43.2
-0.7
2.6
60.8
43.5
Minor BPS
61.1
0.43
1.7
76.33
40.1

Associated Gene:

Gene:
IGSF11
Ensembl Gene ID:
ENSAPLG00000008337
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008672
83859325 - 83889044
29720