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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83886389_83887738_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83886389 - 83887738
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTCATT
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TTATTCTCCATT
Flanking Amino Acid:
VPKLPPTATQAHPWSIGLIA
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
70.9
40.8
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
78.7
0.65
0.7
72.6
25.7
Minor 5ss
38.9
-1.3
3.3
57.6
46.7
Minor BPS
53.1
0.18
2
76.49
40.5

Associated Gene:

Gene:
IGSF11
Ensembl Gene ID:
ENSAPLG00000008337
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031983
83859168 - 83889044
29877