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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83887510_83887738_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83887510 - 83887738
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TTATTCTCCATT
Flanking Amino Acid:
TCLLDLQVIAPHPWSIGLIA
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
78.7
0.65
0.7
72.6
25.7
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
53.1
0.18
2
76.49
40.5

Associated Gene:

Gene:
IGSF11
Ensembl Gene ID:
ENSAPLG00000008337
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036704
83859168 - 83890890
31723
ENSAPLT00000008672
83859325 - 83889044
29720