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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83887890_83888593_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83887890 - 83888593
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TCTACATGGACC
Flanking Amino Acid:
EEEEEIPNEIREDDLPPKCS
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
83.2
0.75
0.7
76
32.5
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
49.6
-0
1.8
64.82
40.6

Associated Gene:

Gene:
IGSF11
Ensembl Gene ID:
ENSAPLG00000008337
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036704
83859168 - 83890890
31723
ENSAPLT00000031983
83859168 - 83889044
29877
ENSAPLT00000008672
83859325 - 83889044
29720