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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83915116_83915205_F

Intron Information:

Intron Rank:
132104
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
83915116 - 83915205
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GGACTGCCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TCTCACTGGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
55.3
0.12
1
47.4
40.3
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
55
0.24
1.7
74.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035253
83914770 - 83938949
24180