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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83950326_83951836_R

Intron Information:

Intron Rank:
155539
Intron Class:
major
Intron Phase:
Intron Coordinates:
83950326 - 83951836
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTCG
5'SS Class:
major
3'SS Sequence:
GCCTATTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CTTATCCTAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
66.4
40.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
66.7
0.38
0.8
60.7
35
Minor 5ss
42.7
-0.8
2.7
56.4
41.7
Minor BPS
47.9
-0
1.9
68.82
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037936
83950002 - 83952761
2760