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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83987656_83990348_F

Intron Information:

Intron Rank:
135724
Intron Class:
major
Intron Phase:
Intron Coordinates:
83987656 - 83990348
Intron Length:
2693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GATATCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTACAATGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
76.1
0.59
1
66
44.8
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
56.3
0.28
2
82.91
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023066
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040109
83987101 - 83990497
3397