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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84074940_84091479_F

Intron Information:

Intron Rank:
123328
Intron Class:
major
Intron Phase:
Intron Coordinates:
84074940 - 84091479
Intron Length:
16540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GGGATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.8
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
39
-1.2
2.7
48.2
40.4
Minor BPS
47.2
-0.1
1.5
57.27
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021789
84074833 - 84092096
17264