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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84119081_84127907_F

Intron Information:

Intron Rank:
137676
Intron Class:
major
Intron Phase:
Intron Coordinates:
84119081 - 84127907
Intron Length:
8827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.6
41.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.9
0.87
0.6
85.3
22.1
Minor 5ss
41.6
-0.9
3.2
56.2
47.9
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037679
84117578 - 84128729
11152