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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84139207_84140276_F

Intron Information:

Intron Rank:
147509
Intron Class:
major
Intron Phase:
Intron Coordinates:
84139207 - 84140276
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
CTGTGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTCTCCTTCCCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
75.1
0.57
0.9
69.6
36.8
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
44.2
-0.3
3.7
75.03
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036056
84139091 - 84141863
2773