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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84167842_84185067_F

Intron Information:

Intron Rank:
135213
Intron Class:
major
Intron Phase:
Intron Coordinates:
84167842 - 84185067
Intron Length:
17226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTGCTTTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
75.5
0.57
0.9
69
37.2
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
55.6
0.16
1.4
63.86
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017345
84155228 - 84185125
29898