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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84185217_84194393_F

Intron Information:

Intron Rank:
135217
Intron Class:
major
Intron Phase:
Intron Coordinates:
84185217 - 84194393
Intron Length:
9177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTGC
5'SS Class:
major
3'SS Sequence:
GTTTCTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATTTCACTAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
39.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
79.5
0.66
0.8
74.6
34.9
Minor 5ss
43
-0.8
2.4
53.7
43.4
Minor BPS
50
-0
2.1
72.38
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027943
84155228 - 84194792
39565