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Intron Name: Anas_platyrhynchos_platyrhynchos_1_8456775_8479816_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8456775 - 8479816

Intron Length:

23042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

ATTGTCTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

GGTATAGTAACA

Flanking Amino Acid:

TEQHDSRWLNDPRFISAHLI

Intron Amino Acid Position:

223

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

77.7

31.7

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

80.1

0.68

0.8

77.5

36.2

Minor 5ss

41.3

-1

2.5

47.2

43.7

Minor BPS

-0.3

2.2

58.71

40.4

Associated Gene:

Gene:

SEMA3A

Ensembl Gene ID:

ENSAPLG00000012883

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046379

8346550 - 8515401

168852

ENSAPLT00000013989

8346264 - 8515401

169138

ENSAPLT00000013411

8271191 - 8515401

244211