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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84765580_84829531_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84765580 - 84829531
Intron Length:
63952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
TTCTCCCTACAG
Flanking Amino Acid:
EEVESSSHTLGLPVRSVDFT
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
83.1
0.75
0.7
76.7
25.5
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
48.5
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
LSAMP
Ensembl Gene ID:
ENSAPLG00000010325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010753
84765510 - 85087775
322266