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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8479960_8481165_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8479960 - 8481165
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACTTCTATTATT
Flanking Amino Acid:
THARIGQICKNDFGGHRSLV
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.8
0.56
0.9
74.8
33.7
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
49.9
0.07
1.9
70.66
40.5

Associated Gene:

Gene:
SEMA3A
Ensembl Gene ID:
ENSAPLG00000012883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013411
8271191 - 8515401
244211
ENSAPLT00000046379
8346550 - 8515401
168852
ENSAPLT00000013989
8346264 - 8515401
169138