Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84810694_84829531_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

84810694 - 84829531

Intron Length:

18838

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGTGT

5'SS Class:

major

3'SS Sequence:

CTTCTCCCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAG

U12 Branch Point Sequence:

TTCTCCCTACAG

Flanking Amino Acid:

HSRLGCLGLTGLPVRSVDFT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.2

61.5

45.6

Major BPS

59.6

0.24

1.5

57.3

41.7

Major PPT

83.1

0.75

0.7

76.7

25.5

Minor 5ss

42.9

-0.8

3.5

65.1

46.1

Minor BPS

48.5

-0.2

2.1

61.25

46.2

Associated Gene:

Gene:

LSAMP

Ensembl Gene ID:

ENSAPLG00000010325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030660

84810591 - 85087775

277185