About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8481281_8481378_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8481281 - 8481378
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
GTTATTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTATTGTTACAG
Flanking Amino Acid:
NGIDTHFDELQDVFLMNSKD
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.3
75.8
34.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79.1
0.65
1
72.3
42.5
Minor 5ss
34.4
-1.8
3.2
42.7
38
Minor BPS
45.1
-0.5
2.3
56.73
44.7

Associated Gene:

Gene:
SEMA3A
Ensembl Gene ID:
ENSAPLG00000012883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013411
8271191 - 8515401
244211
ENSAPLT00000046379
8346550 - 8515401
168852
ENSAPLT00000013989
8346264 - 8515401
169138