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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8481449_8482560_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8481449 - 8482560
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAAT
5'SS Class:
major
3'SS Sequence:
CCCTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTCCCCTTATTT
Flanking Amino Acid:
PIVYGVFTTSSNIFKGSAVC
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
72.2
39
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.7
0.74
0.8
80.1
30.7
Minor 5ss
32.2
-2
3.5
47.9
47.8
Minor BPS
60.1
0.4
1.7
72.9
44.5

Associated Gene:

Gene:
SEMA3A
Ensembl Gene ID:
ENSAPLG00000012883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046379
8346550 - 8515401
168852
ENSAPLT00000013989
8346264 - 8515401
169138
ENSAPLT00000013411
8271191 - 8515401
244211