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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84829611_84948630_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
84829611 - 84948630
Intron Length:
119020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
TTATCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATCC
Flanking Amino Acid:
TVRQGDTAILRCYVEDRSSK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.2
0.75
0.8
77.8
30.6
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
63.4
0.4
1.6
69.18
42.9

Associated Gene:

Gene:
LSAMP
Ensembl Gene ID:
ENSAPLG00000010325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041993
84828757 - 85088152
259396
ENSAPLT00000030660
84810591 - 85087775
277185
ENSAPLT00000010753
84765510 - 85087775
322266
ENSAPLT00000043094
84828757 - 85088152
259396