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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84948864_84994642_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84948864 - 84994642
Intron Length:
45779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
TTTGTCTTCACA
Flanking Amino Acid:
KTSQVYLIVQVPPKISNISS
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
64.5
0.45
1.9
78.35
38.8

Associated Gene:

Gene:
LSAMP
Ensembl Gene ID:
ENSAPLG00000010325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030660
84810591 - 85087775
277185
ENSAPLT00000010753
84765510 - 85087775
322266
ENSAPLT00000043094
84828757 - 85088152
259396
ENSAPLT00000041993
84828757 - 85088152
259396