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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8496284_8499150_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8496284 - 8499150
Intron Length:
2867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTAACT
Flanking Amino Acid:
VLLEEMTVFREPTVISAMKI
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.6
0.44
0.8
60.5
29.4
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
75.1
0.87
1.2
85.48
34.3

Associated Gene:

Gene:
SEMA3A
Ensembl Gene ID:
ENSAPLG00000012883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013411
8271191 - 8515401
244211
ENSAPLT00000046379
8346550 - 8515401
168852
ENSAPLT00000013989
8346264 - 8515401
169138