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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8499193_8503813_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8499193 - 8503813
Intron Length:
4621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATAT
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTGTTTAATT
Flanking Amino Acid:
ISAMKISTKQQQLYIGSATG
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
70.7
35.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.9
80.4
36.6
Minor 5ss
38.6
-1.3
3.3
56.3
47.8
Minor BPS
68.9
0.67
1.7
84.22
37.1

Associated Gene:

Gene:
SEMA3A
Ensembl Gene ID:
ENSAPLG00000012883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046379
8346550 - 8515401
168852
ENSAPLT00000013989
8346264 - 8515401
169138
ENSAPLT00000013411
8271191 - 8515401
244211