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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_84994769_85064230_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84994769 - 85064230
Intron Length:
69462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
CCATCTGTATTT
Flanking Amino Acid:
VITWRHLTPTGREFEGEEEY
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
44.8
-0.3
2.2
59.48
44.9

Associated Gene:

Gene:
LSAMP
Ensembl Gene ID:
ENSAPLG00000010325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041993
84828757 - 85088152
259396
ENSAPLT00000030660
84810591 - 85087775
277185
ENSAPLT00000010753
84765510 - 85087775
322266
ENSAPLT00000043094
84828757 - 85088152
259396