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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85064366_85067930_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85064366 - 85067930
Intron Length:
3565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GAAAACATGACA
Flanking Amino Acid:
DVKQVRVTVNYPPTITESKS
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
78.5
0.64
0.7
73.3
24.9
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
45
-0.4
1.8
52.35
38.2

Associated Gene:

Gene:
LSAMP
Ensembl Gene ID:
ENSAPLG00000010325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030660
84810591 - 85087775
277185
ENSAPLT00000010753
84765510 - 85087775
322266
ENSAPLT00000043094
84828757 - 85088152
259396
ENSAPLT00000041993
84828757 - 85088152
259396