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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8508022_8513127_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8508022 - 8513127
Intron Length:
5106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CTTTGCTTTACA
Flanking Amino Acid:
LTHCSDLQHHDNPSGQTVEE
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
86
0.81
0.8
79.7
32.4
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
60.2
0.32
2.1
75.18
42.3

Associated Gene:

Gene:
SEMA3A
Ensembl Gene ID:
ENSAPLG00000012883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046379
8346550 - 8515401
168852
ENSAPLT00000013989
8346264 - 8515401
169138
ENSAPLT00000013411
8271191 - 8515401
244211