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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85108973_85129949_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85108973 - 85129949
Intron Length:
20977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATCAT
U12 Branch Point Sequence:
CTTTCCCTACTA
Flanking Amino Acid:
VESSQTEEKTDAVEETKPTE
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
64.2
0.35
1.2
65.8
41
Major PPT
73.6
0.53
0.8
67.4
33.8
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
56
0.18
2
71.63
41

Associated Gene:

Gene:
GAP43
Ensembl Gene ID:
ENSAPLG00000002345
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002349
85108884 - 85130728
21845