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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85122213_85129949_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85122213 - 85129949
Intron Length:
7737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
GTCTGTGGAAAT
Flanking Amino Acid:
VESSQTEEKTVTSLSAWDTE
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
52
0.05
1.3
59
44.6
Major PPT
74.3
0.55
0.9
65.9
40.9
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
39.7
-0.7
2.3
58.29
44.7

Associated Gene:

Gene:
GAP43
Ensembl Gene ID:
ENSAPLG00000002345
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026965
85121488 - 85130728
9241