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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8513271_8514945_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8513271 - 8514945
Intron Length:
1675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAG
5'SS Class:
major
3'SS Sequence:
TTCTCTAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
QKQNDDHKEEIKVDDRMIRT
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.1
41.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
78.7
0.65
0.9
73.6
34.7
Minor 5ss
34.4
-1.8
3.5
46
49.3
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
SEMA3A
Ensembl Gene ID:
ENSAPLG00000012883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013411
8271191 - 8515401
244211
ENSAPLT00000046379
8346550 - 8515401
168852
ENSAPLT00000013989
8346264 - 8515401
169138