Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85212246_85235813_R

Intron Information:

Intron Rank:

128882

Intron Class:

major

Intron Phase:

Intron Coordinates:

85212246 - 85235813

Intron Length:

23568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGCAG

5'SS Class:

major

3'SS Sequence:

TGTTCATTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

CCTTGTTCATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

63.3

42.8

Major BPS

84.8

0.86

85.7

34.9

Major PPT

80.4

0.68

0.8

78.2

35.2

Minor 5ss

31.8

-2.1

3.3

38.8

40.7

Minor BPS

43.3

-0.4

2.1

58.89

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023516

85212145 - 85237520

25376