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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85235933_85237445_R

Intron Information:

Intron Rank:
128883
Intron Class:
major
Intron Phase:
Intron Coordinates:
85235933 - 85237445
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTGAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68
0.41
0.8
62
27.2
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
61.8
0.23
1.7
71.51
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016477
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023516
85212145 - 85237520
25376