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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_855253_856394_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
855253 - 856394
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATAGTG
5'SS Class:
major
3'SS Sequence:
CCCCTCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTCTCCATGACT
Flanking Amino Acid:
VFIDLEPTVIDEIRTGTYHG
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
64.5
39.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
76.9
0.61
0.7
72
26.1
Minor 5ss
34.3
-1.8
3.5
44.3
44.5
Minor BPS
65.6
0.57
1.7
80.17
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006857
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036602
852893 - 857001
4109
ENSAPLT00000007118
852893 - 859090
6198