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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85819266_85819941_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85819266 - 85819941
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTGGAGC
Flanking Amino Acid:
ILNLCAISIDRYTAVVKPVQ
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78.8
0.65
0.9
73.2
37.2
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
58
0.23
1.8
73.88
37.2

Associated Gene:

Gene:
DRD3
Ensembl Gene ID:
ENSAPLG00000002289
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002391
85813006 - 85823025
10020