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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_85820085_85820801_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85820085 - 85820801
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
TTCTCCTCCCCA
Flanking Amino Acid:
CPLLFGFNTTGDPSVCSISN
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
80.7
0.69
0.7
73.2
31.7
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
40.5
-0.7
3.6
67.11
45.4

Associated Gene:

Gene:
DRD3
Ensembl Gene ID:
ENSAPLG00000002289
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024308
85819817 - 85823025
3209
ENSAPLT00000002391
85813006 - 85823025
10020